update apparmor profiles

apparmor.d/atom

@@ -48,32 +48,29 @@ profile atom @{exec_path} {
 
   deny /{usr/,}local/bin/ r,
   deny /{usr/,}bin/ r,
-  #/{usr/,}bin/bash      rix,
-  #/{usr/,}bin/zsh       rix,
-  #/{usr/,}bin/env       rix,
-  #/{usr/,}bin/rmdir     rix,
-  #/{usr/,}bin/{,e}grep  rix,
-  #/{usr/,}bin/ls        rix,
-  #/{usr/,}bin/gawk      rix,
-  #/{usr/,}bin/tty       rix,
-  #/{usr/,}bin/dircolors rix,
-  #/{usr/,}bin/cut       rix,
-  #/{usr/,}bin/xwininfo  rix,
-  #/{usr/,}bin/date      rix,
+  #/{usr/,}bin/{,ba,da}sh rix,
+  #/{usr/,}bin/zsh        rix,
+  #/{usr/,}bin/env        rix,
+  #/{usr/,}bin/rmdir      rix,
+  #/{usr/,}bin/{,e}grep   rix,
+  #/{usr/,}bin/ls         rix,
+  #/{usr/,}bin/gawk       rix,
+  #/{usr/,}bin/tty        rix,
+  #/{usr/,}bin/dircolors  rix,
+  #/{usr/,}bin/cut        rix,
+  #/{usr/,}bin/xwininfo   rix,
+  #/{usr/,}bin/date       rix,
   # The expr and uname tools are needed or Atom won't start with the following error:
   #  Your platform () is not supported.
-  /{usr/,}bin/expr       rix,
-  /{usr/,}bin/uname      rix,
+  /{usr/,}bin/expr        rix,
+  /{usr/,}bin/uname       rix,
   # The following also are needed to start Atom
-  /{usr/,}bin/basename  rix,
-  /{usr/,}bin/readlink  rix,
-  /{usr/,}bin/dirname   rix,
-  /{usr/,}bin/mkdir     rix,
-  /{usr/,}bin/nohup     rix,
-  /{usr/,}bin/cat       rix,
-  # The dash shell is needed to install packages. If you don't want to install any, coment the
-  # following line out.
-  #/{usr/,}bin/dash     rix,
+  /{usr/,}bin/basename    rix,
+  /{usr/,}bin/readlink    rix,
+  /{usr/,}bin/dirname     rix,
+  /{usr/,}bin/mkdir       rix,
+  /{usr/,}bin/nohup       rix,
+  /{usr/,}bin/cat         rix,
 
   /{usr/,}bin/lsb_release   rPx -> child-lsb_release,
   /{usr/,}bin/xdg-open      rCx -> open,
@@ -194,6 +191,10 @@ profile atom @{exec_path} {
 
     /{usr/,}bin/xdg-open mr,
 
+    owner @{HOME}/ r,
+
+    owner @{run}/user/[0-9]*/ r,
+
     # Allowed apps to open
     /{usr/,}lib/firefox/firefox rPUx,